species:   Scscl
pid:       PID1601
parent:    Ssc-milR-77
paralog:   
locus:     NW_001820819.1:818042-818128
matures:   ['UUCAAGUCCUUCGGCUCUUUCU', 'AAAGAGCCCGAGACUGAUCA']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820819.1:818042-818128

7 out of bounds
12 alignments
7 proper strand
6 stranded perfect matches

          **********************                     ************************          
CUUUUGCUAGUAAAAGAGCCCGAGACUGAUCAAUGACUCCUUCAAGGAUACGUCUUUCAAGUCCUUCGGCUCUUUCUUCCAUUUCCU
............((((((((.((((((((...(((..((((...))))..)))...)).))).))).))))))))............
-------------------------------------------------------UUCAAGUCCUUCGGCUCUUUCU---------- l=22 a=0 c
------------AAAGAGCCCGAGACUGAUCA------------------------------------------------------- l=20 a=0 c*
---------------------------------UGACUCCUUCAAGGAUACGUCU-------------------------------- l=22 a=3 ma
------------AAAGAGCCCGAGACUGAUCA------------------------------------------------------- l=20 a=0 ma*

-UUUUGCUAGUAAAAGAGCCCGA---------------------------------------------------------------- l=22 a=1 
----UGCUAGUAAAAGAGCCCGAGACU------------------------------------------------------------ l=23 a=1 
---------------------------------UGACUCCUUCAAGGAUACGUCU-------------------------------- l=22 a=3 (ma)
-------------------------------------------------------------UCCUUCGGCUCUUcC----------- l=15 a=1 
----------------------------------------------------------------UUCGGCUCUUUCUUCCAUUUCCU l=23 a=1 

mb-00110
ax-1011011
ku-01
ss-111110101100
fn-101
